Command-line tool

salmon

brew/salmon

Checked 25 Oct 2026, 21:09 UTC · Listing refreshed from Homebrew, winget, npm, Scoop and cargo; npm packages checked against OSV.dev

Transcript-level quantification from RNA-seq reads

Website Source

At a glance

Type

Command-line tool

Install on

macOS, Linux

Last checked

25 Oct 2026, 21:09 UTC

Install it

macOS

brew install salmon

Linux

brew install salmon

Related command-line tools

• stringtie
  Transcript assembly and quantification for RNA-Seq
• oarfish
  Long read RNA-seq quantification
• texinfo
  Official documentation format of the GNU project
• kallisto
  Quantify abundances of transcripts from RNA-Seq data
• atg
  Convert transcripts between different file formats
• gffcompare
  Compare, merge and annotate GFF/GTF transcript files

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