Command-line tool

kallisto

brew/kallisto

Checked 25 Oct 2026, 21:09 UTC · Listing refreshed from Homebrew, winget, npm, Scoop and cargo; npm packages checked against OSV.dev

Quantify abundances of transcripts from RNA-Seq data

Website

At a glance

Type

Command-line tool

Install on

macOS, Linux

Last checked

25 Oct 2026, 21:09 UTC

Install it

macOS

brew install kallisto

Linux

brew install kallisto

Related command-line tools

• bracken
  Bayesian estimation of species abundance from Kraken output
• stringtie
  Transcript assembly and quantification for RNA-Seq
• salmon
  Transcript-level quantification from RNA-seq reads
• atg
  Convert transcripts between different file formats
• gffcompare
  Compare, merge and annotate GFF/GTF transcript files

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