MCP server

Biolab MCP Server

io.github.srikarjy/biolab-mcp-server

Checked 26 Oct 2026, 08:29 UTC · Connected to it and listed its tools

Auditable MCP server for PubMed, Europe PMC, ClinicalTrials.gov, and bioRxiv/medRxiv queries

Website Source

At a glance

Type

MCP server

Publisher

Not verified

Status

Working at last check

Tools

30

Token cost

About 3,310 tokens per request

Sets up in

Claude Code, Claude Desktop, Codex, Gemini CLI, Cursor, VS Code, Antigravity, ChatGPT, OpenAI API, Grok

Last checked

26 Oct 2026, 08:29 UTC

Connect it to your agent

Add to CursorAdd to VS CodeVS Code Insiders

Opens the app, which shows the server and asks you to confirm. For other apps, copy the setup below.

Claude Code

claude mcp add --transport http biolab-mcp-server https://srikarjy025-biolab-mcp.hf.space/mcp

Claude Desktop

Settings → Connectors → Add custom connector, and paste the URL.

Codex (config.toml)

[mcp_servers.biolab-mcp-server]
url = "https://srikarjy025-biolab-mcp.hf.space/mcp"

Gemini CLI

{"mcpServers":{"biolab-mcp-server":{"httpUrl":"https://srikarjy025-biolab-mcp.hf.space/mcp"}}}

Cursor

{"mcpServers":{"biolab-mcp-server":{"url":"https://srikarjy025-biolab-mcp.hf.space/mcp"}}}

VS Code

{"servers":{"biolab-mcp-server":{"type":"http","url":"https://srikarjy025-biolab-mcp.hf.space/mcp"}}}

Antigravity

agy mcp add biolab-mcp-server https://srikarjy025-biolab-mcp.hf.space/mcp

ChatGPT

Settings → Apps & Connectors → Advanced settings: turn on Developer mode, then Create a connector and paste the URL. Which plans can do this varies.

OpenAI API (Responses tools)

{"type":"mcp","server_label":"biolab-mcp-server","server_url":"https://srikarjy025-biolab-mcp.hf.space/mcp","require_approval":"always"}

Grok (xAI API tools)

{"type":"mcp","server_label":"biolab-mcp-server","server_url":"https://srikarjy025-biolab-mcp.hf.space/mcp"}

Tools

• add_evidence_to_collection ~144 tokens
  Add or update a retrieval in a scientist-reviewed evidence collection.
• create_claim ~90 tokens
  Create a scientific claim record without asserting that it is true.
• create_evidence_collection ~112 tokens
  Create a reviewed evidence collection in a project.
• create_evidence_watch ~145 tokens
  Create a saved query for explicit evidence-change monitoring.
• create_project ~86 tokens
  Create a persistent scientist research project.
• fetch ~63 tokens
  Fetch one preserved evidence record by retrieval ID.
• get_artifact ~73 tokens
  Fetch an output artifact by its sha256 (text only; capped in size).
• get_evidence_collection ~81 tokens
  Return a collection and its reviewed evidence items.
• get_execution ~77 tokens
  Fetch one execution record, including output artifact hashes.
• get_project_report ~83 tokens
  Return collections, claims, evidence links, watches, and events for a project.
• get_retrieval ~96 tokens
  Retrieve a full retrieval record by its retrieval_id. Args: retrieval_id: the UUID returned by search_pubmed
• link_claim_evidence ~148 tokens
  Propose or record how one retrieval relates to a claim.
• list_evidence_collections ~86 tokens
  List evidence collections, optionally within one project.
• list_evidence_events ~77 tokens
  List change events previously detected by an evidence watch.
• list_evidence_watches ~84 tokens
  List saved evidence watches, optionally within one project.
• list_execution_tools ~60 tokens
  List runnable tools with their pinned versions, containers and devices.
• list_executions ~89 tokens
  List recent execution records, newest first.
• list_projects ~45 tokens
  List scientist research projects.
• replay_execution ~86 tokens
  Re-run a recorded execution and report whether its outputs reproduced. Writes nothing.
• run_all_evidence_watches ~60 tokens
  Run all active watches and return explicit per-watch failures.
• run_evidence_watch ~79 tokens
  Run one evidence watch and record added, removed, or revised evidence.
• run_tool ~236 tokens
  Run a registered tool and seal an ExecutionRecord (inputs, versions, output hashes). Args: tool: tool name from list_execution_tools inputs: tool inputs (JSON object); stored verbatim so the run can be replayed agent_id: calling agent or workflow identity retriev
• search ~71 tokens
  Search all evidence sources for ChatGPT/Codex knowledge compatibility.
• search_biorxiv ~243 tokens
  List bioRxiv/medRxiv preprints by category and log each to the audit trail. No free-text search exists on this API — only category listing (last 30 days). Args: category: category, e.g. "neuroscience", "bioinformatics", or "all" agent_id: which agent is asking, e.g. "alethe
• search_clinicaltrials ~183 tokens
  Search ClinicalTrials.gov and log every retrieved study to the audit trail. Args: query: condition/disease search string, sent to ClinicalTrials.gov verbatim agent_id: which agent is asking, e.g. "aletheia:advocate" max_results: how many studies to retrieve (default 5)
• search_europepmc ~178 tokens
  Search Europe PMC and log every retrieved article to the audit trail. Args: query: exact search string, sent to Europe PMC verbatim — no normalization agent_id: which agent is asking, e.g. "aletheia:advocate" max_results: how many articles to retrieve (default 5)
• search_evidence ~226 tokens
  Search several scientific sources in one explicitly audited workflow. Args: query: scientific evidence query sent to each selected source agent_id: calling agent or workflow identity sources: any of pubmed, europepmc, clinicaltrials, uniprot, opentargets max_resu
• search_pubmed ~173 tokens
  Search PubMed and log every retrieved paper to the audit trail. Args: query: exact search string, sent to PubMed verbatim — no normalization agent_id: which agent is asking, e.g. "aletheia:advocate" max_results: how many papers to retrieve (default 5)
• trace_claim ~77 tokens
  Trace a claim to supporting, conflicting, contextual, or insufficient evidence.
• verify_executions ~59 tokens
  Verify the execution hash chain and that every output artifact is intact.

Browse

• GitHub tools
• GitHub and code hosting
• Research papers

Related MCP servers

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• Health & medicines
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