MCP server

Metabolights

io.github.pipeworx-io/metabolights

Checked 26 Oct 2026, 08:29 UTC · Connected to it and listed its tools

MetaboLights MCP — EBI's metabolomics study repository.

Website Source

At a glance

Type

MCP server

Publisher

pipeworx.io (verified by the MCP Registry)

Status

Working at last check

Tools

44

Token cost

About 26,611 tokens per request

Sets up in

Claude Code, Claude Desktop, Codex, Gemini CLI, Cursor, VS Code, Antigravity, ChatGPT, OpenAI API, Grok

Last checked

26 Oct 2026, 08:29 UTC

Connect it to your agent

Add to CursorAdd to VS CodeVS Code Insiders

Opens the app, which shows the server and asks you to confirm. For other apps, copy the setup below.

Claude Code

claude mcp add --transport http metabolights https://gateway.pipeworx.io/metabolights/mcp

Claude Desktop

Settings → Connectors → Add custom connector, and paste the URL.

Codex (config.toml)

[mcp_servers.metabolights]
url = "https://gateway.pipeworx.io/metabolights/mcp"

Gemini CLI

{"mcpServers":{"metabolights":{"httpUrl":"https://gateway.pipeworx.io/metabolights/mcp"}}}

Cursor

{"mcpServers":{"metabolights":{"url":"https://gateway.pipeworx.io/metabolights/mcp"}}}

VS Code

{"servers":{"metabolights":{"type":"http","url":"https://gateway.pipeworx.io/metabolights/mcp"}}}

Antigravity

agy mcp add metabolights https://gateway.pipeworx.io/metabolights/mcp

ChatGPT

Settings → Apps & Connectors → Advanced settings: turn on Developer mode, then Create a connector and paste the URL. Which plans can do this varies.

OpenAI API (Responses tools)

{"type":"mcp","server_label":"metabolights","server_url":"https://gateway.pipeworx.io/metabolights/mcp","require_approval":"always"}

Grok (xAI API tools)

{"type":"mcp","server_label":"metabolights","server_url":"https://gateway.pipeworx.io/metabolights/mcp"}

Tools

• get_study ~109 tokens
  Fetch metadata for a single MetaboLights study by its accession (e.g. "MTBLS1"): title, full description, and the organisms studied (species + tissue/part). Keyless.
• search_studies ~199 tokens
  Search EBI MetaboLights, the metabolomics (metabolite / small-molecule) study repository, by keyword — disease, metabolite, organism, or analytical technique (e.g. "diabetes", "glucose NMR", "Homo sapiens LC-MS"). Returns matching study accessions (e.g. MTBLS1) with name and a short description.

Browse

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