MCP server

Gprofiler

io.github.pipeworx-io/gprofiler

Checked 26 Oct 2026, 08:29 UTC · Connected to it and listed its tools

g:Profiler (University of Tartu) — functional enrichment analysis for a gene list against GO…

Working at last checkOfficial: pipeworx.io's GitHub account (pipeworx-io)About 28,210 tokens per request once connected45 tools

https://gateway.pipeworx.io/gprofiler/mcp

At a glance

Type: MCP server
Publisher: pipeworx.io (verified by the MCP Registry)
Status: Working at last check
Tools: 45
Token cost: About 28,210 tokens per request
Sets up in: Claude Code, Claude Desktop, Codex, Gemini CLI, Cursor, VS Code, Antigravity, ChatGPT, OpenAI API, Grok
Last checked: 26 Oct 2026, 08:29 UTC

Opens the app, which shows the server and asks you to confirm. For other apps, copy the setup below.

Claude Code

claude mcp add --transport http gprofiler https://gateway.pipeworx.io/gprofiler/mcp

Claude Desktop

Settings → Connectors → Add custom connector, and paste the URL.

Codex (config.toml)

[mcp_servers.gprofiler]
url = "https://gateway.pipeworx.io/gprofiler/mcp"

Gemini CLI

{"mcpServers":{"gprofiler":{"httpUrl":"https://gateway.pipeworx.io/gprofiler/mcp"}}}

Cursor

{"mcpServers":{"gprofiler":{"url":"https://gateway.pipeworx.io/gprofiler/mcp"}}}

VS Code

{"servers":{"gprofiler":{"type":"http","url":"https://gateway.pipeworx.io/gprofiler/mcp"}}}

Antigravity

agy mcp add gprofiler https://gateway.pipeworx.io/gprofiler/mcp

ChatGPT

Settings → Apps & Connectors → Advanced settings: turn on Developer mode, then Create a connector and paste the URL. Which plans can do this varies.

OpenAI API (Responses tools)

{"type":"mcp","server_label":"gprofiler","server_url":"https://gateway.pipeworx.io/gprofiler/mcp","require_approval":"always"}

Grok (xAI API tools)

{"type":"mcp","server_label":"gprofiler","server_url":"https://gateway.pipeworx.io/gprofiler/mcp"}

gprofiler_convert_ids ~539 tokens
"Convert these gene symbols to Ensembl IDs" / "what is the Ensembl/Entrez/UniProt ID for [gene]" / "map my probe IDs to gene names" / "translate this gene list into [namespace]" — AUTHORITATIVE identifier conversion (g:Convert) between gene, protein, transcript and microarray-probe namespaces for an
gprofiler_enrich ~926 tokens
"What pathways are enriched in [gene list]" / "run GO enrichment on these genes" / "what biological processes do [genes] share" / "functional annotation of my differentially expressed genes" — AUTHORITATIVE functional enrichment (g:GOSt) for a list of genes, proteins or probes against GO, KEGG, Reac
gprofiler_orthologs ~442 tokens
"What is the mouse ortholog of [human gene]" / "find the human equivalent of [zebrafish/fly/yeast gene]" / "map this gene list to [species]" — AUTHORITATIVE cross-species ortholog mapping (g:Orth) via Ensembl Compara. Give a gene list in a source organism and a target organism; returns the orthologo

Seqbench Workbench
Hosted DNA/RNA/protein tools: primers, oligos, PCR, cloning, CRISPR, alignment, batch & pipelines.
String Db
STRING-DB MCP — protein-protein interaction networks.
STRING Database MCP Server
Query STRING interactions, enrichment, annotations, homology, and PPI networks.
Jean — Molecular Biology & Genomics
Validated molecular biology tools: cloning, primers, CRISPR, Sanger, alignment, qPCR, phylogenetics
SiteCheck Health & Travel
121 pay-per-call agent tools: health care, drug, provider and travel data tools. x402
DeepDNA
Pharmacogenomics for AI agents: cited drug–gene, gene and rsID lookups plus a medication screen.
Gwas Catalog
GWAS Catalog (EBI/NHGRI) MCP — curated catalog of genome-wide association studies.
xportalx
AI agent gateway with web fetching, data extraction, crypto pricing, and x402 payments

[![AptLynx](https://aptlynx.net/badge/io.github.pipeworx-io/gprofiler.svg)](https://aptlynx.net/servers/io.github.pipeworx-io/gprofiler)

Listing text is written by the maker; AptLynx lists tools and does not vouch for them. Find another tool · Browse by topic · For agents