MCP server

Oliver's mTOR Atlas

io.github.open-mtor-atlas/mtor-atlas

Checked 26 Oct 2026, 08:29 UTC · Connected to it and listed its tools

Evidence-labelled mTOR research: studies, entities, pathway claims, contradictions, open questions.

Website Source

At a glance

Type

MCP server

Publisher

Not verified

Status

Working at last check

Tools

13

Token cost

About 3,001 tokens per request

Sets up in

Claude Code, Claude Desktop, Codex, Gemini CLI, Cursor, VS Code, Antigravity, ChatGPT, OpenAI API, Grok

Last checked

26 Oct 2026, 08:29 UTC

Connect it to your agent

Add to CursorAdd to VS CodeVS Code Insiders

Opens the app, which shows the server and asks you to confirm. For other apps, copy the setup below.

Claude Code

claude mcp add --transport http mtor-atlas https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp

Claude Desktop

Settings → Connectors → Add custom connector, and paste the URL.

Codex (config.toml)

[mcp_servers.mtor-atlas]
url = "https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp"

Gemini CLI

{"mcpServers":{"mtor-atlas":{"httpUrl":"https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp"}}}

Cursor

{"mcpServers":{"mtor-atlas":{"url":"https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp"}}}

VS Code

{"servers":{"mtor-atlas":{"type":"http","url":"https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp"}}}

Antigravity

agy mcp add mtor-atlas https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp

ChatGPT

Settings → Apps & Connectors → Advanced settings: turn on Developer mode, then Create a connector and paste the URL. Which plans can do this varies.

OpenAI API (Responses tools)

{"type":"mcp","server_label":"mtor-atlas","server_url":"https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp","require_approval":"always"}

Grok (xAI API tools)

{"type":"mcp","server_label":"mtor-atlas","server_url":"https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp"}

Tools

• atlas_about ~105 tokens
  Dataset version, corpus snapshot date, counts, evidence-code legend and how to cite the dataset. When the Atlas does not report the contested and conflicting counts itself, derived_counts adds them, computed from the relations, so they can be compared with find_contradictions.
• evidence_between ~187 tokens
  Direct curated relations between two entities (either direction) with full cards for the supporting and conflicting studies. Answers questions such as "what is the evidence that A acts on B?". A study that repeats within the answer is sent in full once and afterwards as a short card with full_card_i
• find_contradictions ~387 tokens
  Relations the Atlas marks as contested or that carry conflicting studies, with both sides of the evidence. status says which; breakdown splits the total. A contested relation with no conflicting study listed is flagged conflicting_studies_missing; relations named in its note or boundary are shown in
• find_relations ~346 tokens
  Signed, evidence-linked pathway relations (claims such as "Rheb activates mTORC1"). Filter by an entity on either end, by source/target, effect, contested status or minimum strength of the best supporting evidence.
• get_author ~137 tokens
  One profiled author by profile id ("claudio-de-virgilio"), full name, author-list form or ORCID: lab, role, profile URL and short cards of their studies in the Atlas.
• get_entity ~186 tokens
  One entity (gene/protein, complex, drug, disease, process...) with its linked studies as short cards (first studies_limit) and every pathway relation it takes part in as a one-line claim. Accepts an id, a name or a synonym.
• get_question ~92 tokens
  One open or frontier question by ID (e.g. "H1", "F2"): the gap, what changed, what is still open, how it could be tested, linked studies.
• get_relation ~89 tokens
  One pathway relation by ID (e.g. "RHEB-MTORC1"): mechanism, boundary conditions, confidence, supporting and conflicting studies.
• get_study ~215 tokens
  Full record for one study by Atlas ID (e.g. "SAB1994"), PMID, DOI or PMCID: abstract excerpt, extracted findings, linked entities, the relations it supports or contradicts, related open questions.
• list_questions ~283 tokens
  The Atlas's open questions (evidence gaps with testable hypotheses) and frontier questions. Paged. By default still_open is shortened at a sentence boundary (still_open_truncated); get_question has the full text, or pass brief=false.
• search_authors ~243 tokens
  People in the Atlas by full name ("Claudio De Virgilio"), author-list form ("De Virgilio C"), ORCID or lab. results are authors with a profile page (full name, ORCID, lab, their study IDs); in_author_lists are matching names in study author lists without a profile.
• search_entities ~302 tokens
  Find genes/proteins, complexes, drugs, diseases, processes, nutrients and outcomes by name or synonym. Each result says where it matched (match_field: name, synonym or description); use match="name" to leave out description-only hits.
• search_studies ~429 tokens
  Search the curated studies by keywords, optionally filtered by evidence code, a linked entity (gene, drug, disease...) and year range. Searches title, finding, authors (author-list form "Sabatini DM" and full names of profiled authors), PMID, DOI, PMCID, linked entities and their synonyms, journal,

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