MCP server

BioCosm

io.github.nhoverte/biocosm

Checked 25 Oct 2026, 20:29 UTC · Connected to it and listed its tools

Biotech intelligence for AI agents: drugs, targets, diagnostics, PoS estimates, and writeups.

Website

At a glance

Type

MCP server

Publisher

Not verified

Status

Working at last check

Tools

13

Token cost

About 1,795 tokens per request

Sets up in

Claude Code, Claude Desktop, Codex, Gemini CLI, Cursor, VS Code, Antigravity, ChatGPT, OpenAI API, Grok

Last checked

25 Oct 2026, 20:29 UTC

Connect it to your agent

Add to CursorAdd to VS CodeVS Code Insiders

Opens the app, which shows the server and asks you to confirm. For other apps, copy the setup below.

Claude Code

claude mcp add --transport http biocosm https://biocosm-mcp.fly.dev/mcp

Claude Desktop

Settings → Connectors → Add custom connector, and paste the URL.

Codex (config.toml)

[mcp_servers.biocosm]
url = "https://biocosm-mcp.fly.dev/mcp"

Gemini CLI

{"mcpServers":{"biocosm":{"httpUrl":"https://biocosm-mcp.fly.dev/mcp"}}}

Cursor

{"mcpServers":{"biocosm":{"url":"https://biocosm-mcp.fly.dev/mcp"}}}

VS Code

{"servers":{"biocosm":{"type":"http","url":"https://biocosm-mcp.fly.dev/mcp"}}}

Antigravity

agy mcp add biocosm https://biocosm-mcp.fly.dev/mcp

ChatGPT

Settings → Apps & Connectors → Advanced settings: turn on Developer mode, then Create a connector and paste the URL. Which plans can do this varies.

OpenAI API (Responses tools)

{"type":"mcp","server_label":"biocosm","server_url":"https://biocosm-mcp.fly.dev/mcp","require_approval":"always"}

Grok (xAI API tools)

{"type":"mcp","server_label":"biocosm","server_url":"https://biocosm-mcp.fly.dev/mcp"}

Tools

• find_by_phase ~176 tokens
  List drugs/diagnostics at a specific clinical phase.
• find_by_target ~115 tokens
  Find all drugs that target a specific gene/protein.
• find_related ~248 tokens
  Find nodes connected to a given node. Three relationship types are derived on-the-fly: - "drug_target": for a drug, the targets it hits (and vice versa for a target node, the drugs that hit it) - "same_company": drugs sharing a company with this node - "same_target_class": d
• get_company_portfolio ~91 tokens
  Get a company's full drug/diagnostic portfolio from BioCosm.
• get_coverage ~100 tokens
  Report BioCosm's actual data coverage so you never mistake missing data for a real-world zero. An empty or absent field on a node means "not in BioCosm's data," never a true zero. BioCosm is AI-generated and may contain errors.
• get_node ~232 tokens
  Get full details for a single BioCosm node: identity and all name aliases, classification, gene targets and mechanism, therapeutic areas, companies, revenue history where available (sparse: ~100 drugs, mostly blockbusters, as annualized quarterly estimates; source links when present), probability-of
• get_node_freshness ~100 tokens
  Get freshness details for a single node: writeup age, enrichment hash match, staleness score, validation score.
• get_pos_score ~131 tokens
  Get the Probability of Success estimate for a node, including the base rate, adjustment factors with reasoning, confidence interval, and model version. Returns None for nodes without a PoS score (typically only late-stage pipeline drugs are scored).
• get_staleness_report ~90 tokens
  Get writeup staleness report: overall stats, top stale nodes, data source freshness.
• get_stats ~80 tokens
  Get a high-level overview of the BioCosm database: total nodes, writeups, companies, breakdowns by type/status/domain, validation scores, and recent pipeline runs.
• get_writeup ~98 tokens
  Get the full writeup for a BioCosm node, including all sections, citations, structured data, and validation score.
• list_by_therapeutic_area ~115 tokens
  List all nodes in a given therapeutic area.
• search_nodes ~219 tokens
  Search BioCosm nodes by name, gene symbol, target, therapeutic area, or company. Results are ranked: exact name/brand matches first, then partial name matches, with a node-type prior (canonical drug/diagnostic nodes rank above gene-target nodes, which rank above ChEMBL salt-form duplicates). Nodes

Browse

• GitHub tools
• Company data
• GitHub and code hosting
• Databases
• Health and medicine

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