Command-line tool

snakefmt

brew/snakefmt

Checked 25 Oct 2026, 21:09 UTC · Listing refreshed from Homebrew, winget, npm, Scoop and cargo; npm packages checked against OSV.dev

Snakemake code formatter

Website Source

At a glance

Type

Command-line tool

Install on

Windows, macOS, Linux

Last checked

25 Oct 2026, 21:09 UTC

Install it

Windows

pipx install snakefmt

macOS

brew install snakefmt
pipx install snakefmt

Linux

brew install snakefmt
pipx install snakefmt

Format a specific Snakefile

snakefmt path/to/snakefile

Format all Snakefiles recursively in a specific directory

snakefmt path/to/directory

Format a file using a specific configuration file

snakefmt --config path/to/config.toml path/to/snakefile

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