Command-line tool
bowtie2
brew/bowtie2
Checked 25 Oct 2026, 21:09 UTC · Listing refreshed from Homebrew, winget, npm, Scoop and cargo; npm packages checked against OSV.dev
Fast and sensitive gapped read aligner
At a glance
- Type
- Command-line tool
- Install on
- macOS, Linux
- Last checked
- 25 Oct 2026, 21:09 UTC
Install it
macOS
brew install bowtie2
Linux
brew install bowtie2
Related command-line tools
- fastga
Pairwise whole genome aligner - rammap
Extensible and performant aligner and read mapper sysinternals - rna-star
RNA-seq aligner - lastz
Pairwise aligner for DNA sequences - diamond
Accelerated BLAST compatible local sequence aligner - minimap2
Versatile pairwise aligner for genomic and spliced nucleotide sequences - ggshield
Scanner for secrets and sensitive data in code - git-secrets
Prevents you from committing sensitive information to a git repo
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